Contents of platform specific annotation package

Annotation data package hgu95av2 for Affymetrix HG U95Av2 is used as an example for platform specific annotatin data package

hgu95av2ACCNUMhgu95av2CHRLENGTHShgu95av2CHRLOChgu95av2CHRhgu95av2ENZYME2PROBEhgu95av2ENZYMEhgu95av2GENENAMEhgu95av2GO2ALLPROBEShgu95av2GO2PROBEhgu95av2GOhgu95av2GRIFhgu95av2HGIDhgu95av2LOCUSIDhgu95av2MAPhgu95av2NMhgu95av2NPhgu95av2OMIMhgu95av2ORGANISMhgu95av2PATH2PROBEhgu95av2PATHhgu95av2PMID2PROBEhgu95av2PMIDhgu95av2SUMFUNChgu95av2SYMBOLhgu95av2UNIGENE
Name Description
Maps probe ids to GenBank accession number or user specified ids
A vector containing the lenths (in base pairs) of chromosomes
Maps probe ids to chromosomal locations
Maps probe ids to chromosome numbers
Maps enzyme EC numbers to probe ids
Maps probe ids to enzyme EC numbers
Maps probe ids to gene names
An annotation data file for GO2ALLPROBES in the hgu95av2 package
Maps GO ids to probe ids with specific association
Maps probe ids to GO data (ids, evidence code, and ontology)
Maps probe ids to the unique PubMed id
Maps probe ids to internal HomoloGenIds
Maps probe ids to LocusLink ids
Maps probes to cytobands
Maps probe ids to RefSeq accession numbers for mRNA records
Maps probe ids to RefSeq accession numbers for protein records
Maps probe ids to MIM numbers
A string for the name of the organism the package concerns
Maps KEGG pathway ids to probe ids
Maps probe ids to KEGG pathway ids
Maps PubMed ids to probe ids
Maps probe ids to all the assocation PubMed ids
Maps probe ids to a summary of gene function
Maps probe ids to gene symbols
Maps probe ids to UniGene ids