The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)


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Documentation for package ‘ddCt’ version 1.4.0

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$-method Working with SDM files
barploterrbar Barplot with error bars.
ColMap Class "InputReader"
ColMap-class Working with SDM files
coreData Working with SDM files
coreData-method Working with SDM files
coreData<- Working with SDM files
coreData<--method Working with SDM files
CSVFrame Class "InputReader"
CSVReader-class Class "InputReader"
Ct ddCt Expression
Ct-method Working with SDM files
Ct-method ddCt Expression
Ct<- Working with SDM files
Ct<--method Working with SDM files
CtErr ddCt Expression
CtErr-method ddCt Expression
dCt ddCt Expression
dCt-method ddCt Expression
dCtErr ddCt Expression
dCtErr-method ddCt Expression
ddCt ddCt Expression
ddCt-method ddCt Expression
ddCtAbsolute absolute quantification for Taqman data
ddCtErr ddCt Expression
ddCtErr-method ddCt Expression
ddCtExpression Apply the ddCt algorithm for a given data set
ddCtExpression-class ddCt Expression
ddCtExpression-method Apply the ddCt algorithm for a given data set
ddCtExpression-methods Apply the ddCt algorithm for a given data set
detectorNames Working with SDM files
detectorNames-method Working with SDM files
detectorNames<- Working with SDM files
detectorNames<--method Working with SDM files
elist Write ddCtExpression object into data frame or files
elist-method ddCt Expression
elistWrite Write ddCtExpression object into data frame or files
elistWrite-method ddCt Expression
errBarchart Draw barchart of relative expression level with error-bars
errBarchart-method Draw barchart of relative expression level with error-bars
errBarchart-methods Draw barchart of relative expression level with error-bars
errBarchartParameter-class Class "errBarchartParameter"
exprsUndeterminedLabel-method Class "errBarchartParameter"
fileNames Working with SDM files
fileNames-method Working with SDM files
getDir Auxillary functions for the executive scripts
InputFrame Class "InputReader"
InputFrame-class Working with SDM files
InputFrame-method Read an SDM file
InputReader-class Class "InputReader"
level ddCt Expression
level-method ddCt Expression
levelErr ddCt Expression
levelErr-method ddCt Expression
names-method Working with SDM files
numberCt ddCt Expression
numberCt-method ddCt Expression
numberNA ddCt Expression
numberNA-method ddCt Expression
readSDM Read an SDM file
removeDetector Working with SDM files
removeDetector-method Working with SDM files
removeDetector-methods Working with SDM files
removeSample Working with SDM files
removeSample-method Working with SDM files
removeSample-methods Working with SDM files
replaceDetector Working with SDM files
replaceDetector-method Working with SDM files
replaceDetector-methods Working with SDM files
replaceSample Working with SDM files
replaceSample-method Working with SDM files
replaceSample-methods Working with SDM files
replaceVectorByEquality REPLACE ITEMS OF VECTOR BY EQUALITY
rightCensoring Working with SDM files
rightCensoring-method Working with SDM files
rightCensoring-method Read an SDM file
sampleNames Working with SDM files
sampleNames-method Working with SDM files
sampleNames<- Working with SDM files
sampleNames<--method Working with SDM files
SDMFrame Read an SDM file
SDMFrame-class Working with SDM files
SDMReader-class Class "InputReader"
show-method Working with SDM files
show-method Class "errBarchartParameter"
uniqueDetectorNames Working with SDM files
uniqueDetectorNames-method Working with SDM files
uniqueDetectorNames<- Working with SDM files
uniqueDetectorNames<--method Working with SDM files
uniqueSampleNames Working with SDM files
uniqueSampleNames-method Working with SDM files
uniqueSampleNames<- Working with SDM files
uniqueSampleNames<--method Working with SDM files
write.htmltable Write a data frame into an html table within a html page
writeSimpleTabCsv Write a data frame into a tab delimited file
[-method Working with SDM files
[[-method Working with SDM files