Collection of annotation related methods for mass spectrometry data

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Documentation for package ‘CAMERA’ version 1.6.0

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annotate Deconvolute/Annotate LC/ESI-MS data
annotate,xsAnnotate-methods Deconvolute/Annotate LC/ESI-MS data
annotateDiffreport Deconvolute/Annotate LC/ESI-MS data
annotateDiffreport,xsAnnotate-methods Deconvolute/Annotate LC/ESI-MS data
findAdducts Calculate Adducts and Annotate LC/ESI-MS Spectra
findAdducts-method Calculate Adducts and Annotate LC/ESI-MS Spectra
findIsotopes Deconvolute/Annotate LC/ESI-MS data
findIsotopes-method Deconvolute/Annotate LC/ESI-MS data
findNeutralLoss Find pseudospectra that contains a specific neutral loss
findNeutralLossSpecs Find pseudospectra that contains a specific neutral loss
getIsotopeCluster Retrieve the annotatad isotopes
getPeaklist Retrieve the annotatad peaklist
getpspectra Retrieve a spectra-group peaklist
groupCorr EIC correlation grouping of LC/ESI-MS data
groupCorr-method EIC correlation grouping of LC/ESI-MS data
groupFWHM FWHM-Grouping of LC/ESI-MS data
groupFWHM-method FWHM-Grouping of LC/ESI-MS data
mm14 Extract of marker mixture 14 LC/MS data
plotEICs Plot extracted ion chromatograms from (multiple) Pseudospectra
plotEICs-method Plot extracted ion chromatograms from (multiple) Pseudospectra
plotEICs.xsAnnotate Plot extracted ion chromatograms from (multiple) Pseudospectra
plotPsSpectrum Plot a Pseudospectrum
plotPsSpectrum-method Plot a Pseudospectrum
plotPsSpectrum.xsAnnotate Plot a Pseudospectrum
psDist Distance methods for xsAnnotate
psDist-method Distance methods for xsAnnotate
psDist-methods Distance methods for xsAnnotate
show-method Class xsAnnotate, a class for annotate peak data
xsAnnotate Constructor for a xsAnnotate object which one assigned xcmsSet object
xsAnnotate-class Class xsAnnotate, a class for annotate peak data