Analysis of high-throughput microscopy-based screens


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Documentation for package ‘imageHTS’ version 1.0.0

Help Pages

collectCellFeatures Collect cell features.
countObjects Count the number of objects in a segmented image
extractFeatures Extract features from segmented images.
fileHTS Get access to screen data files
getCellFtrsATH Example segmentation and feature extraction functions.
getImageConf Get the imageHTS configuration
getUnames Get well unique names
getWellFeatures Get well metadata, features and annotation information
highlightSegmentation Highlight segmented objects in an image
imageHTS Package overview
imageHTS-class Package overview
installCellPicker Set up imageHTS web modules
installWebQuery Set up imageHTS web modules
parseDCF Parse a DCF file
parseImageConf Instantiate an imageHTS object
popCellPicker Pop up imageHTS web modules
popWebQuery Pop up imageHTS web modules
predictCellLabels Learn, classify and predict cell labels.
prw2uname Convert and parse well unique names
readHTS Get access to screen data files
readLearnTS Learn, classify and predict cell labels.
rowcol2well Convert and parse well unique names
segmentATH Example segmentation and feature extraction functions.
segmentWells Segment cells in well images
summarizeWells Summarize cell features
uname2prw Convert and parse well unique names
well2rowcol Convert and parse well unique names
zprime Compute the Z'-factor quality score