Appendix 1: Installing and using IGV

NOTE: All instructions in this document should be performed on your laptop, not on the RStudio Server AMI.


    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039508_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039509_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039512_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039513_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039516_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039517_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039520_sorted.bam
    http://s3-us-west-2.amazonaws.com/oct2014bamfiles/SRR1039521_sorted.bam
  

You may see a warning that the bam file does not contain any sequence names which match the current genome. You can ignore this (click OK).