Bioconductor version: Release (2.12)
This R package provides facilities for processing the read data generated by the next-gen sequencing technologies. These facilities include quality assessment, read alignment, read summarization, exon-exon junction detection, absolute expression calling and SNP discovery. This package can be used to process both short and long reads. It supports major sequencing platforms such as Illumina GA/HiSeq, Roche 454, ABI SOLiD and Ion Torrent.
Author: Wei Shi and Yang Liao with contributions from Jenny Zhiyin Dai and Timothy Triche, Jr.
Maintainer: Wei Shi <shi at wehi.edu.au>
To install this package, start R and enter:
To cite this package in a publication, start R and enter:
|R Script||Rsubread Vignette|
|biocViews||HighThroughputSequencing, Sequencing, Software|
|In Bioconductor since||BioC 2.8 (R-2.13)|
|Depends On Me|
|Mac OS X 10.6 (Snow Leopard)||Rsubread_1.10.2.tgz|
|Package Downloads Report||Download Stats|
Common Bioconductor workflows include: