affy

Methods for Affymetrix Oligonucleotide Arrays

The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Author Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling , Wolfgang Huber, James MacDonald , Benjamin I. P. Rubinstein, Christopher Workman , John Zhang
Maintainer Rafael A. Irizarry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affy")

Vignettes (Documentation)

Package Downloads
affy.pdf
builtinMethods.pdf
customMethods.pdf
vim.pdf
Package source affy_1.20.0.tar.gz
Windows binary affy_1.20.0.zip
MacOS X 10.4 (Tiger) binary affy_1.20.0.tgz
MacOS X 10.5 (Leopard) binary affy_1.20.0.tgz

Details

biocViews
Microarray , OneChannel , Preprocessing
Depends
R , Biobase , methods , utils
Suggests
tkWidgets , geneplotter , affydata
Imports
affyio , preprocessCore
SystemRequirements
License LGPL (>= 2.0)
URL
dependsOnMe
AffyExpress , ArrayExpress , ArrayTools , GeneTraffic , Harshlight , RefPlus , adSplit , affyContam , affyPLM , affyPara , affyQCReport , affycoretools , affylmGUI , affypdnn , altcdfenvs , arrayMvout , bgx , dualKS , ecolitk , exonmap , factDesign , gcrma , logitT , lumi , maDB , makecdfenv , matchprobes , panp , plier , plw , puma , rHVDM , simpleaffy , sscore , tilingArray , vsn , webbioc
suggestsMe
BiocCaseStudies , BufferedMatrixMethods , beadarraySNP , beadarray , hexbin , limma , made4 , oneChannelGUI , siggenes