crlmm

Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms

Author	Rafael A Irizarry, Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Maintainer	Benilton S Carvalho , Robert Scharpf , Matt Ritchie

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("crlmm")

crlmm Vignette - Copy Number	PDF	R Script
crlmm Vignette - Copy number for Illumina platforms	PDF	R Script
crlmm Vignette - Downstream Analysis	PDF	R Script
crlmm Vignette - Genotyping	PDF	R Script
crlmmIllumina.pdf	PDF
Reference Manual

biocViews	Microarray , Preprocessing , SNP , Bioinformatics , CopyNumberVariants
Depends	R , methods , Biobase , oligoClasses
Imports	affyio , ellipse , ff , genefilter , mvtnorm , preprocessCore , splines , stats , SNPchip , utils
Suggests	hapmapsnp6 , genomewidesnp6Crlmm , snpMatrix
System Requirements
License	Artistic-2.0
URL
Depends On Me	VanillaICE
Imports Me
Suggests Me