marray
Exploratory analysis for two-color spotted microarray data
Bioconductor version: 2.6
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Author: Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer: Yee Hwa (Jean) Yang
To install this package, start R and enter:
source("http:///biocLite.R")
biocLite("marray")
To cite this package in a publication, start R and enter:
citation("marray")
Documentation
| ExampleHTML.pdf | ||
| R Script | marray Normalization | |
| R Script | marray Overview | |
| R Script | marrayClasses Overview | |
| R Script | marrayClasses Tutorial (short) | |
| R Script | marrayInput Introduction | |
| R Script | marrayPlots Overview | |
| widget1.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, TwoChannel, Preprocessing |
| Depends | R, limma, methods |
| Imports | |
| Suggests | tkWidgets |
| System Requirements | |
| License | LGPL |
| URL | http://www.maths.usyd.edu.au/u/jeany/ |
| Depends On Me | CGHbase, GeneTraffic, OLIN, RMAGEML, convert, dyebias, maigesPack, nnNorm, stepNorm |
| Imports Me | arrayQualityMetrics, arrayQuality, nnNorm |
| Suggests Me | Agi4x44PreProcess, AgiMicroRna, Mfuzz, hexbin, limma |
| Version | 1.26.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | marray_1.26.0.tar.gz |
| Windows Binary | marray_1.26.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | marray_1.26.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Flow Cytometry and other assays
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