annotate

Annotation for microarrays

Using R enviroments for annotation.

Author	R. Gentleman
Maintainer	Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annotate")

Annotation Overview	PDF	R Script
Basic GO Usage	PDF	R Script
HOWTO: Use the online query tools	PDF	R Script
HowTo: Get HTML Output	PDF	R Script
HowTo: use chromosomal information	PDF	R Script
Using Affymetrix Probe Level Data	PDF	R Script
Using Data Packages	PDF	R Script
Using the homology package	PDF	R Script
Reference Manual

biocViews	Annotation , Pathways , GO , Affymetrix
Depends	R , AnnotationDbi
Imports	Biobase , AnnotationDbi , xtable , graphics , utils , stats , methods
Suggests	Biobase , hgu95av2.db , genefilter , Biostrings , rae230a.db , rae230aprobe , tkWidgets , XML , GO.db , org.Hs.eg.db , org.Mm.eg.db , hom.Hs.inp.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	Agi4x44PreProcess , ChromHeatMap , GSEABase , GeneAnswers , MLInterfaces , PCpheno , RpsiXML , ScISI , geneplotter , idiogram , lumi , macat , ontoTools , safe
Imports Me	Category , ChromHeatMap , GOstats , GSEABase , GlobalAncova , ScISI , affycoretools , codelink , genefilter , geneplotter , globaltest , safe , splicegear
Suggests Me	BiocCaseStudies , GOstats , GSEAlm , biomaRt , geneplotter , globaltest , maigesPack , oneChannelGUI , puma , qpgraph , siggenes