genefilter

genefilter: methods for filtering genes from microarray experiments

Some basic functions for filtering genes

Author	R. Gentleman, V. Carey, W. Huber, F. Hahne
Maintainer	Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefilter")

Diagnostic plots for independent filtering	PDF	R Script
How to find genes whose expression profile is similar to that of specified genes	PDF	R Script
Using the genefilter function to filter genes from a microarray dataset	PDF	R Script
Reference Manual

biocViews	Bioinformatics , Microarray
Depends
Imports	AnnotationDbi , annotate , Biobase , graphics , methods , stats , survival
Suggests	Biobase , class , hgu95av2.db , methods , tkWidgets
System Requirements
License	Artistic-2.0
URL
Depends On Me	Agi4x44PreProcess , CNTools , GeneMeta , MLInterfaces , affyQCReport , cellHTS2 , cellHTS , exonmap , simpleaffy
Imports Me	Category , Ringo , XDE , affycoretools , arrayQualityMetrics , crlmm , factDesign , simpleaffy , tilingArray
Suggests Me	AffyExpress , ArrayTools , BiocCaseStudies , Category , GOstats , GSEAlm , MCRestimate , SNPchip , VanillaICE , XDE , annotate , clusterStab , codelink , logicFS , lumi , oligo , oneChannelGUI , qpgraph , rtracklayer , siggenes , topGO