sigPathway

Pathway Analysis

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author	Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)
Maintainer	Weil Lai

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sigPathway")

sigPathway	PDF	R Script
Reference Manual

biocViews	Bioinformatics , DifferentialExpression , MultipleComparisons
Depends	R
Imports
Suggests	hgu133a.db , XML , AnnotationDbi
System Requirements
License	GPL-2
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102, http://www.chip.org/~ppark/Supplements/PNAS05.html
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