ARRmNormalization

Adaptive Robust Regression normalization for Illumina methylation data

Bioconductor version: Development (3.0)

Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

Author: Jean-Philippe Fortin, Celia M.T. Greenwood, Aurelie Labbe.

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ARRmNormalization")

To cite this package in a publication, start R and enter:

    citation("ARRmNormalization")

Documentation

PDF R Script ARRmNormalization
PDF   Reference Manual

Details

biocViews DNAMethylation, Microarray, Preprocessing, Software, TwoChannel
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.15.1), ARRmData
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ARRmNormalization_1.5.0.tar.gz
Windows Binary ARRmNormalization_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ARRmNormalization_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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