AffyExpress

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: Development (3.0)

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyExpress")

To cite this package in a publication, start R and enter:

    citation("AffyExpress")

Documentation

PDF R Script 1. Primer
PDF   Reference Manual

Details

biocViews Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version 1.31.0
In Bioconductor since BioC 2.1 (R-2.6)
License LGPL
Depends R (>= 2.10), affy(>= 1.23.4), limma
Imports
Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
System Requirements
URL
Depends On Me
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Package Downloads

Package Source AffyExpress_1.31.0.tar.gz
Windows Binary AffyExpress_1.31.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AffyExpress_1.31.0.tgz
Mac OS X 10.9 (Mavericks)
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