To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiocCaseStudies")

In most cases, you don't need to download the package archive at all.

BiocCaseStudies

This is the development version of BiocCaseStudies; for the stable release version, see BiocCaseStudies.

BiocCaseStudies: Support for the Case Studies Monograph

Bioconductor version: Development (3.0)

Software and data to support the case studies.

Author: R. Gentleman, W. Huber, F. Hahne, M. Morgan, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

Citation (from within R, enter citation("BiocCaseStudies")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("BiocCaseStudies")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCaseStudies")

 

PDF   Reference Manual

Details

biocViews Infrastructure, Software
Version 1.27.0
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends tools, methods, utils, Biobase
Imports
Suggests affy(>= 1.17.3), affyPLM(>= 1.15.1), affyQCReport(>= 1.17.0), ALL(>= 1.4.3), annaffy(>= 1.11.1), annotate(>= 1.17.3), AnnotationDbi(>= 1.1.6), apComplex(>= 2.5.0), Biobase(>= 1.17.5), bioDist(>= 1.11.3), biocGraph(>= 1.1.1), biomaRt(>= 1.13.5), CCl4(>= 1.0.6), CLL(>= 1.2.4), Category(>= 2.5.0), class (>= 7.2-38), cluster (>= 1.11.9), convert(>= 1.15.0), gcrma(>= 2.11.1), genefilter(>= 1.17.6), geneplotter(>= 1.17.2), GO.db(>= 2.0.2), GOstats(>= 2.5.0), graph(>= 1.17.4), GSEABase(>= 1.1.13), hgu133a.db(>= 2.0.2), hgu95av2.db, hgu95av2cdf(>= 2.0.0), hgu95av2probe(>= 2.0.0), hopach(>= 1.13.0), KEGG.db(>= 2.0.2), kohonen (>= 2.0.2), lattice (>= 0.17.2), latticeExtra (>= 0.3-1), limma(>= 2.13.1), MASS (>= 7.2-38), MLInterfaces(>= 1.13.17), multtest(>= 1.19.0), org.Hs.eg.db(>= 2.0.2), ppiStats(>= 1.5.4), randomForest (>= 4.5-20), RBGL(>= 1.15.6), RColorBrewer (>= 1.0-2), Rgraphviz(>= 1.17.11), vsn(>= 3.4.0), weaver(>= 1.5.0), xtable (>= 1.5-2), yeastExpData(>= 0.9.11)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BiocCaseStudies_1.27.0.tar.gz
Windows Binary BiocCaseStudies_1.27.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BiocCaseStudies_1.27.0.tgz
Mac OS X 10.9 (Mavericks) BiocCaseStudies_1.27.0.tgz
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