CALIB

Calibration model for estimating absolute expression levels from microarray data

Bioconductor version: Development (3.0)

This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.

Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal

Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CALIB")

To cite this package in a publication, start R and enter:

    citation("CALIB")

Documentation

PDF R Script CALIB Overview
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.31.0
In Bioconductor since BioC 2.0 (R-2.5)
License LGPL
Depends R (>= 2.10), limma, methods
Imports limma, methods, graphics, stats, utils
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System Requirements
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Package Downloads

Package Source CALIB_1.31.0.tar.gz
Windows Binary CALIB_1.31.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CALIB_1.31.0.tgz
Mac OS X 10.9 (Mavericks)
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