To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Chicago")

In most cases, you don't need to download the package archive at all.

Chicago

DOI: 10.18129/B9.bioc.Chicago    

This is the development version of Chicago; for the stable release version, see Chicago.

CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Bioconductor version: Development (3.6)

A pipeline for analysing Capture Hi-C data.

Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov

Maintainer: Mikhail Spivakov <spivakov at babraham.ac.uk>

Citation (from within R, enter citation("Chicago")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Chicago")

Documentation

HTML R Script CHiCAGO Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Epigenetics, HiC, Sequencing, Software
Version 1.5.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License Artistic-2.0
Depends R (>= 3.2), data.table
Imports matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils
LinkingTo
Suggests argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub
SystemRequirements
Enhances
URL
Depends On Me PCHiCdata
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Chicago_1.5.0.tar.gz
Windows Binary Chicago_1.5.0.zip
Mac OS X 10.11 (El Capitan) Chicago_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Chicago
Package Short Url http://bioconductor.org/packages/Chicago/
Package Downloads Report Download Stats

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