To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DriverNet")

In most cases, you don't need to download the package archive at all.

DriverNet

This is the development version of DriverNet; for the stable release version, see DriverNet.

Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

Bioconductor version: Development (3.0)

DriverNet is a package to predict functional important driver genes in cancer by integrating genome data (mutation and copy number variation data) and transcriptome data (gene expression data). The different kinds of data are combined by an influence graph, which is a gene-gene interaction network deduced from pathway data. A greedy algorithm is used to find the possible driver genes, which may mutated in a larger number of patients and these mutations will push the gene expression values of the connected genes to some extreme values.

Author: Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah

Maintainer: Jiarui Ding <jiaruid at cs.ubc.ca>

To install this package, start R and enter:

Citation (from within R, enter citation("DriverNet")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("DriverNet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DriverNet")

 

PDF R Script An introduction to DriverNet
PDF   Reference Manual

Details

biocViews Network, Software
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-3
Depends R (>= 2.10), methods
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DriverNet_1.5.0.tar.gz
Windows Binary DriverNet_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DriverNet_1.5.0.tgz
Mac OS X 10.9 (Mavericks) DriverNet_1.5.0.tgz
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