GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: Development (3.0)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GGtools")

To cite this package in a publication, start R and enter:

    citation("GGtools")

Documentation

PDF R Script GGtools: software for eQTL identification
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.1.1
In Bioconductor since BioC 1.9 (R-2.4)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table
Imports methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, IRanges, GenomicRanges, iterators, Biostrings, ROCR, biglm
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608, multtest
System Requirements
URL
Depends On Me ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me ceuhm3
Suggests Me hmyriB36, ind1KG

Package Downloads

Package Source GGtools_5.1.1.tar.gz
Windows Binary GGtools_5.1.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GGtools_5.1.1.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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