HTSeqGenie

A NGS analysis pipeline.

Bioconductor version: Development (3.0)

Libraries to perform NGS analysis.

Author: Gregoire Pau, Jens Reeder

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HTSeqGenie")

To cite this package in a publication, start R and enter:

    citation("HTSeqGenie")

Documentation

PDF R Script HTSeqGenie
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 3.15.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 3.0.0), gmapR(>= 1.4.3), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3)
Imports BiocGenerics(>= 0.2.0), IRanges(>= 1.14.3), GenomicRanges(>= 1.7.12), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.3.6)
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source HTSeqGenie_3.15.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
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