KEGGprofile

An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway

Bioconductor version: Development (3.0)

KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.

Author: Shilin Zhao

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("KEGGprofile")

To cite this package in a publication, start R and enter:

    citation("KEGGprofile")

Documentation

PDF R Script KEGGprofile: Application Examples
PDF   Reference Manual
Text   NEWS

Details

biocViews Pathways, Software
Version 1.7.1
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends XML, png, TeachingDemos, KEGG.db
Imports AnnotationDbi
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source KEGGprofile_1.7.1.tar.gz
Windows Binary KEGGprofile_1.7.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) KEGGprofile_1.7.1.tgz
Mac OS X 10.9 (Mavericks)
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