OCplus

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: Development (3.0)

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("OCplus")

To cite this package in a publication, start R and enter:

    citation("OCplus")

Documentation

PDF R Script OCplus Introduction
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.39.0
In Bioconductor since BioC 1.8 (R-2.3)
License LGPL
Depends R (>= 2.1.0), akima
Imports multtest(>= 1.7.3), graphics, grDevices, stats
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Package Downloads

Package Source OCplus_1.39.0.tar.gz
Windows Binary OCplus_1.39.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) OCplus_1.39.0.tgz
Mac OS X 10.9 (Mavericks)
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