To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")

In most cases, you don't need to download the package archive at all.

OperaMate

DOI: 10.18129/B9.bioc.OperaMate    

This is the development version of OperaMate; for the stable release version, see OperaMate.

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Bioconductor version: Development (3.6)

OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.

Author: Chenglin Liu

Maintainer: Chenglin Liu <cliu at sjtu.edu.cn>

Citation (from within R, enter citation("OperaMate")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OperaMate")

 

PDF R Script An introduction to OperaMate
PDF OperaMate-manual.pdf
PDF   Reference Manual

Details

biocViews CellBasedAssays, Normalization, Preprocessing, QualityControl, Software
Version 1.9.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL (>= 3)
Depends R (>= 3.2.0), stats, methods, grDevices
Imports pheatmap, grid, ggplot2, fBasics, gProfileR, gridExtra, reshape2, stabledist
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OperaMate_1.9.0.tar.gz
Windows Binary OperaMate_1.9.0.zip
Mac OS X 10.11 (El Capitan) OperaMate_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OperaMate
Package Short Url http://bioconductor.org/packages/OperaMate/
Package Downloads Report Download Stats

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