To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Pbase")

In most cases, you don't need to download the package archive at all.

Pbase

 

   

This is the development version of Pbase; for the stable release version, see Pbase.

Manipulating and exploring protein and proteomics data

Bioconductor version: Development (3.4)

A set of classes and functions to investigate and understand protein sequence data in the context of a proteomics experiment.

Author: Laurent Gatto [aut], Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>, Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("Pbase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Pbase")

Documentation

HTML R Script Ensembl and UCSC mapping
HTML R Script mapping
HTML R Script Pbase-data
PDF   Reference Manual

Details

biocViews DataImport, DataRepresentation, Infrastructure, MassSpectrometry, Proteomics, Software, Visualization
Version 0.13.2
In Bioconductor since BioC 3.1 (R-3.2) (1.5 years)
License GPL-3
Depends R (>= 2.10), methods, BiocGenerics, Rcpp, Gviz
Imports cleaver(>= 1.3.6), Biobase, Biostrings, IRanges, S4Vectors, mzID, mzR(>= 1.99.1), MSnbase(>= 1.15.5), Pviz, biomaRt, GenomicRanges, rtracklayer
LinkingTo
Suggests testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationHub, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://github.com/ComputationalProteomicsUnit/Pbase
BugReports https://github.com/ComputationalProteomicsUnit/Pbase/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Pbase_0.13.2.tar.gz
Windows Binary Pbase_0.13.2.zip
Mac OS X 10.9 (Mavericks) Pbase_0.13.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Pbase
Package Short Url http://bioconductor.org/packages/Pbase/
Package Downloads Report Download Stats

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