PloGO2

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of PloGO2; for the stable release version, see PloGO2.

Plot Gene Ontology and KEGG pathway Annotation and Abundance

Bioconductor version: Development (3.19)

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Citation (from within R, enter citation("PloGO2")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PloGO2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version	1.15.1
In Bioconductor since	BioC 3.11 (R-4.0) (4 years)
License	GPL-2
Depends	R (>= 4.0), GO.db, GOstats
Imports	lattice, httr, openxlsx, xtable
System Requirements
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)	PloGO2_1.15.1.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PloGO2
Package Short Url	https://bioconductor.org/packages/PloGO2/
Package Downloads Report	Download Stats