PrecisionTrialDrawer

DOI: 10.18129/B9.bioc.PrecisionTrialDrawer    

This is the development version of PrecisionTrialDrawer; to use it, please install the devel version of Bioconductor.

A Tool to Analyze and Design NGS Based Custom Gene Panels

Bioconductor version: Development (3.9)

A suite of methods to design umbrella and basket trials for preision oncology.

Author: Giorgio Melloni , Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Citation (from within R, enter citation("PrecisionTrialDrawer")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PrecisionTrialDrawer", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PrecisionTrialDrawer")

 

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Details

biocViews DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version 0.99.17
License GPL-3
Depends R (>= 3.6)
Imports graphics, grDevices, stats, utils, methods, cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, dplyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PrecisionTrialDrawer_0.99.17.tar.gz
Windows Binary PrecisionTrialDrawer_0.99.17.zip
Mac OS X 10.11 (El Capitan) PrecisionTrialDrawer_0.99.17.tgz
Source Repository git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Package Short Url http://bioconductor.org/packages/PrecisionTrialDrawer/
Package Downloads Report Download Stats

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