RCytoscape

Display and manipulate graphs in Cytoscape

Bioconductor version: Development (3.0)

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Citation (from within R, enter citation("RCytoscape")):

Documentation

PDF R Script RCytoscape Overview
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.15.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC, BiocGenerics
Suggests RUnit
System Requirements
URL http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me categoryCompare, NCIgraph, RamiGO
Suggests Me clipper, GeneNetworkBuilder, graphite, mmnet, NetPathMiner

Package Downloads

Package Source RCytoscape_1.15.0.tar.gz
Windows Binary RCytoscape_1.15.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RCytoscape_1.15.0.tgz
Mac OS X 10.9 (Mavericks) RCytoscape_1.15.0.tgz
Package Downloads Report Download Stats

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