SNAGEE

Signal-to-Noise applied to Gene Expression Experiments

Bioconductor version: Development (3.0)

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Author: David Venet <davenet at ulb.ac.be>

Maintainer: David Venet <davenet at ulb.ac.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SNAGEE")

To cite this package in a publication, start R and enter:

    citation("SNAGEE")

Documentation

PDF R Script SNAGEE Vignette
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software, TwoChannel
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.6.0), SNAGEEdata
Imports
Suggests ALL, hgu95av2.db
System Requirements
URL http://bioconductor.org/
Depends On Me
Imports Me
Suggests Me SNAGEEdata

Package Downloads

Package Source SNAGEE_1.5.0.tar.gz
Windows Binary SNAGEE_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SNAGEE_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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