To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TMixClust")

In most cases, you don't need to download the package archive at all.

TMixClust

DOI: 10.18129/B9.bioc.TMixClust    

This is the development version of TMixClust; to use it, please install the devel version of Bioconductor.

Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

Bioconductor version: Development (3.6)

Implementation of a clustering method for time series gene expression data based on mixed-effects models with Gaussian variables and non-parametric cubic splines estimation. The method can robustly account for the high levels of noise present in typical gene expression time series datasets.

Author: Monica Golumbeanu <monica.golumbeanu at bsse.ethz.ch>

Maintainer: Monica Golumbeanu <monica.golumbeanu at bsse.ethz.ch>

Citation (from within R, enter citation("TMixClust")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TMixClust")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TMixClust")

 

PDF R Script Clustering time series gene expression data with TMixClust
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GeneExpression, Software, StatisticalMethod, TimeCourse
Version 0.99.4
License GPL (>=2)
Depends R (>= 3.4)
Imports gss, mvtnorm, stats, zoo, cluster, utils, BiocParallel, flexclust, grDevices, graphics, Biobase, SPEM
LinkingTo
Suggests rmarkdown, knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TMixClust_0.99.4.tar.gz
Windows Binary TMixClust_0.99.4.zip
Mac OS X 10.11 (El Capitan) TMixClust_0.99.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/TMixClust
Package Short Url http://bioconductor.org/packages/TMixClust/
Package Downloads Report Download Stats

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