To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

In most cases, you don't need to download the package archive at all.

affypdnn

 

   

This is the development version of affypdnn; for the stable release version, see affypdnn.

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: Development (3.4)

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affypdnn")

 

PDF R Script affypdnn
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.47.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
LinkingTo
Suggests affydata, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affypdnn_1.47.0.tar.gz
Windows Binary affypdnn_1.47.0.zip
Mac OS X 10.9 (Mavericks) affypdnn_1.47.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affypdnn
Package Short Url http://bioconductor.org/packages/affypdnn/
Package Downloads Report Download Stats

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