Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: Development (3.0)

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at>

To install this package, start R and enter:


Citation (from within R, enter citation("affypdnn")):


PDF R Script affypdnn
PDF   Reference Manual


biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.39.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Suggests affydata, hgu95av2probe
System Requirements
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Package Downloads

Package Source affypdnn_1.39.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affypdnn_1.39.0.tgz
Mac OS X 10.9 (Mavericks) affypdnn_1.39.0.tgz
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