Fast lasso-based isoform prediction as a flow problem

Bioconductor version: Development (3.0)

Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data.

Author: Elsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe Vert

Maintainer: Elsa Bernard <elsa.bernard at mines-paristech.fr>

To install this package, start R and enter:


Citation (from within R, enter citation("flipflop")):


PDF R Script FlipFlop: Fast Lasso-based Isoform Prediction as a Flow Problem
PDF   Reference Manual
Text   NEWS


biocViews RNASeq, Software
Version 1.3.5
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 2.10.0)
Imports methods, Matrix, IRanges, GenomicRanges
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source flipflop_1.3.5.tar.gz
Windows Binary flipflop_1.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) flipflop_1.3.5.tgz
Mac OS X 10.9 (Mavericks) flipflop_1.3.5.tgz
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