To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")

In most cases, you don't need to download the package archive at all.

genoset

 

   

This is the development version of genoset; for the stable release version, see genoset.

A RangedSummarizedExperiment with methods for copy number analysis

Bioconductor version: Development (3.4)

GenoSet provides an extension of the RangedSummarizedExperiment class with additional API features. This class provides convenient and fast methods for working with segmented genomic data. Additionally, GenoSet provides the class RleDataFrame which stores runs of data along the genome for multiple samples and provides very fast summaries of arbitrary row sets (regions of the genome).

Author: Peter M. Haverty

Maintainer: Peter M. Haverty <phaverty at gene.com>

Citation (from within R, enter citation("genoset")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")

Documentation

HTML R Script genoset
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DataRepresentation, Infrastructure, Microarray, SNP, Software
Version 1.29.8
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics(>= 0.11.3), GenomicRanges(>= 1.17.19), SummarizedExperiment(>= 1.1.6)
Imports S4Vectors(>= 0.9.25), GenomeInfoDb(>= 1.1.3), IRanges(>= 2.5.12), methods, graphics
LinkingTo
Suggests RUnit, knitr, BiocStyle, rmarkdown, DNAcopy, stats, BSgenome, Biostrings
SystemRequirements
Enhances parallel
URL https://github.com/phaverty/genoset
Depends On Me
Imports Me methyAnalysis, VegaMC
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genoset_1.29.8.tar.gz
Windows Binary genoset_1.29.8.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) genoset_1.29.8.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genoset
Package Short Url http://bioconductor.org/packages/genoset/
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