mmnet

What the package does (short line)

Bioconductor version: Development (3.0)

This package gives the implementations microbiome metabolic network constructing and analyzing. It introduces a unique metagenomic systems biology approach, mapping metagenomic data to the KEGG global metabolic pathway and constructing a systems-level network. The system-level network and the next topological analysis will be of great help to analysis the various functional properties, including regulation and metabolic functionality of the metagenome.

Author: Yang Cao, Fei Li

Maintainer: Yang Cao <yiluheihei at gmail.com>, Fei Li <pittacus at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mmnet")

To cite this package in a publication, start R and enter:

    citation("mmnet")

Documentation

PDF R Script mmnet
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Pathways, Sequencing, Software
Version 1.3.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 2)
Depends R (>= 2.14), igraph
Imports Biobase, RJSONIO, stringr, reshape2, ggplot2, KEGGREST, plyr, XML, RCurl, modeltools (>= 0.2-21)
Suggests RCytoscape, graph
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source mmnet_1.3.0.tar.gz
Windows Binary mmnet_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mmnet_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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