ontoCAT

Ontology traversal and search

Bioconductor version: Development (3.0)

The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r

Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky

Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ontoCAT")

To cite this package in a publication, start R and enter:

    citation("ontoCAT")

Documentation

PDF R Script ontoCAT package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Classification, DataRepresentation, Software
Version 1.17.0
In Bioconductor since BioC 2.7 (R-2.12)
License Apache License 2.0
Depends rJava, methods
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me RMassBank

Package Downloads

Package Source ontoCAT_1.17.0.tar.gz
Windows Binary ontoCAT_1.17.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ontoCAT_1.17.0.tgz
Mac OS X 10.9 (Mavericks)
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