To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenopath")

In most cases, you don't need to download the package archive at all.

phenopath

DOI: 10.18129/B9.bioc.phenopath    

This is the development version of phenopath; to use it, please install the devel version of Bioconductor.

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Development (3.6)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("phenopath")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenopath")

Documentation

HTML R Script Vignette Title
PDF   Reference Manual

Details

biocViews Bayesian, GeneExpression, PrincipalComponent, RNASeq, SingleCell, Software
Version 0.99.4
In Bioconductor since BioC 3.6 (R-3.4)
License Apache License (== 2.0)
Depends
Imports Rcpp (>= 0.12.8), methods, stats, Biobase, dplyr, tibble, ggplot2
LinkingTo Rcpp
Suggests knitr, rmarkdown, tidyr, forcats, testthat, scater, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me splatter
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phenopath_0.99.4.tar.gz
Windows Binary phenopath_0.99.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) phenopath_0.99.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/phenopath
Package Short Url http://bioconductor.org/packages/phenopath/
Package Downloads Report Download Stats

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