proteasy

DOI: 10.18129/B9.bioc.proteasy    

This is the development version of proteasy; for the stable release version, see proteasy.

Protease Mapping

Bioconductor version: Development (3.17)

Retrieval of experimentally derived protease- and cleavage data derived from the MEROPS database. Proteasy contains functions for mapping peptide termini to known sites where a protease cleaves. This package also makes it possible to quickly look up known substrates based on a list of (potential) proteases, or vice versa - look up proteases based on a list of substrates.

Author: Martin Rydén [aut, cre]

Maintainer: Martin Rydén <martin.ryden at med.lu.se>

Citation (from within R, enter citation("proteasy")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("proteasy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteasy")

 

HTML R Script Using proteasy to Retrieve and Analyze Protease Data
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, FunctionalGenomics, Proteomics, Software
Version 1.1.0
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-3
Depends R (>= 4.2.0)
Imports data.table, stringr, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, EnsDb.Rnorvegicus.v79, Rcpi, methods, utils
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis
SystemRequirements
Enhances
URL https://github.com/martinry/proteasy
BugReports https://github.com/martinry/proteasy/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proteasy_1.1.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/proteasy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteasy
Package Short Url https://bioconductor.org/packages/proteasy/
Package Downloads Report Download Stats

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