rSFFreader

rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

Bioconductor version: Development (3.0)

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers. The plan is to also write out sff files and to read in flowgrams with some utils

Author: Matt Settles <msettles at uidaho.edu>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho

Maintainer: Matt Settles <msettles at uidaho.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("rSFFreader")

To cite this package in a publication, start R and enter:

    citation("rSFFreader")

Documentation

PDF R Script An introduction to rSFFreader
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Sequencing, Software
Version 0.13.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.13.0), BiocGenerics, IRanges(>= 1.21.10), XVector(>= 0.3.2), Biostrings(>= 2.31.3), GenomicRanges, ShortRead(>= 1.15.9), xtable, methods
Imports methods, IRanges, XVector, Biostrings, ShortRead, GenomicRanges, Biobase
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source rSFFreader_0.13.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) rSFFreader_0.13.0.tgz
Mac OS X 10.9 (Mavericks)
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