restfulSE

DOI: 10.18129/B9.bioc.restfulSE    

This is the development version of restfulSE; for the stable release version, see restfulSE.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Bioconductor version: Development (3.8)

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Citation (from within R, enter citation("restfulSE")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("restfulSE", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("restfulSE")

 

PDF R Script restfulSE -- experiments with SE interface to remote HDF5
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version 1.3.14
License Artistic-2.0
Depends R (>= 3.5), SummarizedExperiment, DelayedArray
Imports utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang
LinkingTo
Suggests knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me tenXplore
Imports Me
Suggests Me BiocOncoTK, BiocSklearn
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package restfulSE_1.3.14.tar.gz
Windows Binary restfulSE_1.3.14.zip
Mac OS X 10.11 (El Capitan) restfulSE_1.3.14.tgz
Source Repository git clone https://git.bioconductor.org/packages/restfulSE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/restfulSE
Package Short Url http://bioconductor.org/packages/restfulSE/
Package Downloads Report Download Stats

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