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This is the development version of rnaSeqMap; for the stable release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: Development (3.0)

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at>; Michal Okoniewski <michal at>

Maintainer: Michal Okoniewski <michal at>

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Citation (from within R, enter citation("rnaSeqMap")):




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PDF R Script rnaSeqMap primer
PDF   Reference Manual


biocViews Annotation, DifferentialExpression, GeneExpression, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version 2.21.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports GenomicRanges, IRanges, edgeR, DESeq, DBI
System Requirements
Depends On Me ampliQueso
Imports Me
Suggests Me

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Package Source rnaSeqMap_2.21.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rnaSeqMap_2.21.0.tgz
Mac OS X 10.9 (Mavericks) rnaSeqMap_2.21.0.tgz
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