." /> Bioconductor - rqt (development version)

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rqt")

In most cases, you don't need to download the package archive at all.

rqt

DOI: 10.18129/B9.bioc.rqt    

This is the development version of rqt; for the stable release version, see rqt.

rqt: utilities for gene-level meta-analysis

Bioconductor version: Development (3.6)

Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: "Gene-set association tests for next-generation sequencing data" by Lee et al (2016), Bioinformatics, 32(17), i611-i619, .

Author: I. Y. Zhbannikov, K. G. Arbeev, A. I. Yashin.

Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov at duke.edu>

Citation (from within R, enter citation("rqt")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rqt")

Documentation

HTML R Script Tutorial for rqt package
PDF   Reference Manual
Text   NEWS

Details

biocViews GenomeWideAssociation, PrincipalComponent, Regression, Sequencing, Software, StatisticalMethod, Survival
Version 1.2.2
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL
Depends R (>= 3.4), SummarizedExperiment
Imports stats, Matrix, ropls, methods, car, RUnit, metap, CompQuadForm, glmnet, utils, pls
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/izhbannikov/rqt
BugReports https://github.com/izhbannikov/rqt/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rqt_1.2.2.tar.gz
Windows Binary rqt_1.2.2.zip
Mac OS X 10.11 (El Capitan) rqt_1.2.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/rqt
Package Short Url http://bioconductor.org/packages/rqt/
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