shinyTANDEM

DOI: 10.18129/B9.bioc.shinyTANDEM    

This is the development version of shinyTANDEM; for the stable release version, see shinyTANDEM.

Provides a GUI for rTANDEM

Bioconductor version: Development (3.9)

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Citation (from within R, enter citation("shinyTANDEM")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("shinyTANDEM", version = "3.9")

Documentation

PDF   Reference Manual

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.21.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-3
Depends rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary shinyTANDEM_1.21.0.zip
Mac OS X 10.11 (El Capitan) shinyTANDEM_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/shinyTANDEM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyTANDEM
Package Short Url http://bioconductor.org/packages/shinyTANDEM/
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