To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

In most cases, you don't need to download the package archive at all.

spade

 

   

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of spade; for the stable release version, see spade.

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: Development (3.3)

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Zach Bjornson <bjornson at stanford.edu>

Citation (from within R, enter citation("spade")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spade")

 

PDF spade package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization
Version 1.19.1
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-2
Depends R (>= 2.11), igraph, Rclusterpp
Imports Biobase, flowCore
LinkingTo
Suggests flowViz
SystemRequirements
Enhances
URL http://cytospade.org
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spade_1.19.1.tar.gz
Windows Binary spade_1.19.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spade_1.17.0.tgz
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/spade
Package Short Url http://bioconductor.org/packages/spade/
Package Downloads Report Download Stats

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