spliceR

Classification of alternative splicing and prediction of coding potential from RNA-seq data.

Bioconductor version: Development (3.0)

An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.

Author: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

Maintainer: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spliceR")

To cite this package in a publication, start R and enter:

    citation("spliceR")

Documentation

PDF R Script spliceR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, RNASeq, RNAseqData, Sequencing, Software, Visualization, software
Version 1.5.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>=2)
Depends R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram, RColorBrewer, plyr
Imports GenomicRanges, IRanges
Suggests BSgenome.Hsapiens.UCSC.hg19, BSgenome
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source spliceR_1.5.0.tar.gz
Windows Binary spliceR_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spliceR_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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