To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spliceSites")

In most cases, you don't need to download the package archive at all.

spliceSites

This is the development version of spliceSites; for the stable release version, see spliceSites.

Manages align gap positions from RNA-seq data

Bioconductor version: Development (3.0)

Align gap positions from RNA-seq data

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("spliceSites")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spliceSites")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

 

PDF R Script RNA-seq
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Proteomics, RNASeq, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends methods, rbamtools, refGenome (>= 1.1.2), doBy, Biobase, Biostrings(>= 2.28.0), seqLogo
Imports BiocGenerics
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spliceSites_1.3.0.tar.gz
Windows Binary spliceSites_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spliceSites_1.3.0.tgz
Mac OS X 10.9 (Mavericks) spliceSites_1.3.0.tgz
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