spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: Development (3.0)

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley <fraley at stat.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spotSegmentation")

To cite this package in a publication, start R and enter:

    citation("spotSegmentation")

Documentation

PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.39.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.10), mclust
Imports
Suggests
System Requirements
URL http://www.stat.washington.edu/fraley
Depends On Me
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Package Downloads

Package Source spotSegmentation_1.39.0.tar.gz
Windows Binary spotSegmentation_1.39.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spotSegmentation_1.39.0.tgz
Mac OS X 10.9 (Mavericks)
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