DOI: 10.18129/B9.bioc.triform    

This is the development version of triform; for the stable release version, see triform.

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: Development (3.9)

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]

Maintainer: Thomas Carroll <tc.infomatics at>

Citation (from within R, enter citation("triform")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("triform", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Triform users guide
PDF   Reference Manual


biocViews ChIPSeq, Sequencing, Software
Version 1.25.1
In Bioconductor since BioC 2.11 (R-2.15) (6.5 years)
License GPL-2
Depends R (>= 2.11.0), IRanges, yaml
Imports BiocGenerics, IRanges(>= 2.5.27), yaml
Suggests RUnit
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package triform_1.25.1.tar.gz
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Mac OS X 10.11 (El Capitan) triform_1.25.1.tgz
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