CHANGES IN VERSION 1.17.1 ------------------------ o updated or fixed the following functions: + getCposDensity : fixed the warning message in checking for NA in a list CHANGES IN VERSION 1.4.3 ------------------------ o updated or fixed the following functions: + findDMR: updated the function to allow it to run without number of processor specification CHANGES IN VERSION 1.4.2 ------------------------ o updated or fixed the following functions: + meth.stats: updated the coverage object error in this function CHANGES IN VERSION 1.4.1 ------------------------ o updated or fixed the following functions: + pool.reads: added this new function to pool reads of replicates into a single file for each condition CHANGES IN VERSION 1.3.3 ------------------------ o updated or fixed the following functions: + profileDNAmetBinParallel: fixed the error when there is single minus strand in GRanges for profiling CHANGES IN VERSION 1.3.2 ------------------------ o updated or fixed the following functions: + meth.call: coverage is outputted now as an GRanges object + findDMR: coverage threshold is used even for unmethylated cytosines + getCposChr: fixed bug which was ignoring Cytosines at the boundary of genomic ranges on both sides CHANGES IN VERSION 1.2.1 ------------------------ o updated or fixed the following functions: + plotMeth: updated arguments: grl, brmeth and genomic co-ordinates; removed arguments: Datatrackname + updated vignette CHANGES IN VERSION 1.0.4 ------------------------ o updated or fixed the following functions: + BSprepare: fixed the problem of chromosome name with numeric values + updated all examples with updated tabix indexed files + updated vignette CHANGES IN VERSION 1.0.3 ------------------------ o updated or fixed the following functions: + BSprepare: fixed the problem of unsorted files + BSprepare: fixed the problem of methylation files with numeric chromosome name + methstats: Added a new function to provide descriptive statistics of methylation data CHANGES IN VERSION 1.0.2 ------------------------ o updated or fixed the following functions: + profileDNAmetBinParallel + updated R version dependency information CHANGES IN VERSION 1.0.0 ------------------------ o initial version with the following functions implemented: + mCsmoothing + findPMDs + plotAnnoBar + mapBSdata2GRanges + findDMR + consolidateDMRs + getCpos + profileDNAmetBin + plotMeth + BSprepare + meth.call + GElist-class + GEcollection-class + BSdataSet-class + BSdata-class