To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Athaliana.TAIR.TAIR9")

In most cases, you don't need to download the package archive at all.

BSgenome.Athaliana.TAIR.TAIR9

This is the development version of BSgenome.Athaliana.TAIR.TAIR9; for the stable release version, see BSgenome.Athaliana.TAIR.TAIR9.

Full genome sequences for Arabidopsis thaliana (TAIR9)

Bioconductor version: Development (3.0)

Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

Citation (from within R, enter citation("BSgenome.Athaliana.TAIR.TAIR9")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Athaliana.TAIR.TAIR9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenome.Athaliana.TAIR.TAIR9")

 

PDF   Reference Manual

Details

biocViews AnnotationData, Arabidopsis_thaliana, BSgenome, Genetics
Version 1.3.1000
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me waveTiling

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Athaliana.TAIR.TAIR9_1.3.1000.tar.gz
Windows Binary BSgenome.Athaliana.TAIR.TAIR9_1.3.99.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BSgenome.Athaliana.TAIR.TAIR9_1.3.99.tgz
Mac OS X 10.9 (Mavericks) BSgenome.Athaliana.TAIR.TAIR9_1.3.99.tgz
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