To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP141.GRCh38")

In most cases, you don't need to download the package archive at all.

XtraSNPlocs.Hsapiens.dbSNP141.GRCh38

DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP141.GRCh38    

This is the development version of XtraSNPlocs.Hsapiens.dbSNP141.GRCh38; for the stable release version, see XtraSNPlocs.Hsapiens.dbSNP141.GRCh38.

Extra SNP locations for Homo sapiens (dbSNP Build 141)

Bioconductor version: Development (3.7)

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. While the SNPlocs.Hsapiens.dbSNP141.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP141.GRCh38")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP141.GRCh38")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version 0.99.12
License Artistic-2.0
Depends R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome(>= 1.35.5)
Imports methods, utils, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests SNPlocs.Hsapiens.dbSNP141.GRCh38, BSgenome.Hsapiens.NCBI.GRCh38(>= 1.3.19)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XtraSNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.12.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP141.GRCh38/
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