To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

In most cases, you don't need to download the package archive at all.

LungCancerLines

 

   

This is the development version of LungCancerLines; for the stable release version, see LungCancerLines.

Reads from Two Lung Cancer Cell Lines

Bioconductor version: Development (3.4)

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

Documentation

PDF   Reference Manual

Details

biocViews CancerData, ExperimentData, Genome, LungCancerData, RNASeqData
Version 0.11.0
License Artistic-2.0
Depends
Imports Rsamtools
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me gmapR, VariantTools
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source LungCancerLines_0.11.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/LungCancerLines/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: